rs52238793 SNP Detail

Summary

• ID
  rs52238793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4488917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCTCCC ACACACACAC
  CCTTTTTCTC CTGGGCTTCA GCATCCATCG TAACTAGTTA GCTCCACTCA CATTATCCAC
  TATTTTACTC AAAATGCGAG GATTACTCTT TGCTTTATCT TCAAGAGAAG TGGAGAGAGC
  CAGACAAAGG AAGAAGAGGG AGAACAGGAG AGGAGATGAG GGGGGAGATT AGAATGGGGT
  R
  AGGGAGAGAA CAGGAGCTGA GAAGAGCGGG AGAGGGGGAG AGAAGGATTC AGACATTCTA
  AACTCTCTTC CTGAGTGCTA TTTAAAGCAG TTTCCAACCT GGAGAGAATG TAATGCACAG
  TTCCTCCATG TGTTTAGTTA AGGACCTCAT GAGTCTTGTG GATTTCTCCA CAACCTAAGT
  GGTTATTATG CTGACCCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132932022	ENSMUSSNP2050776	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52238793					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4488917 () rs orientation: forward

Symbol	Name	Function Class
Rr1253	regulatory region 1253	80 bp proximal
Rr626020	regulatory region 626020	within coordinates