rs52239241 SNP Detail

Summary

• ID
  rs52239241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179989446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT TCCATTCTCC CCCAGATCCA
  Y
  TCCTCTTATG CCCCCCCCCC CCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148390625	ENSMUSSNP6748427	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320631892	CHEV_2_180082358	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52239241					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179989446 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	1162 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	86 bp distal
Rr572722	regulatory region 572722	328 bp distal