rs52239354 SNP Detail

Summary

• ID
  rs52239354
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14930444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGATTT GGGCGCCTGC
  TCCAGAGCTT GGGTCACAGA CAGGGCTTTC CTCAGACCCA GCCTCTCCCA CCGCGTCGGC
  CTCCCTCACA GAGGCGGGCT GGCTCGCACC CCACCGGTCC GCTCCACCAC GCCGCGCAGA
  CCGGCTGTCT AGCGGTCCCG CGAGGAAGGA GCTCGGAGCT CGGAGTCCGA GGCGGTTCAC
  S
  CGGGCGCCCC GTCGAGGGCG AGCTCGCCCG TGCGCCCCGC CCCGCCCCGC CCCCCCGGAG
  GTCGCCGCCC GCCGTGCGCG CGCCTCGCTC GCCGCCCCTG GCCCCCGGCC CGACGCTCGC
  GCGCCGCCGG TTTAACGGTC CTGCCCCCGG AGCCCCGCCC GCCCAGGCCC GCGCCCCGCC
  CCGCCCCCAG CCGCCTGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146046339	ENSMUSSNP2298368	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321047005	CHEV_4_14857591	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52239354					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14930444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	within coordinates
Gm11837	predicted gene 11837	within coordinates
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	583 bp distal
Rr589249	regulatory region 589249	within coordinates
Rr589250	regulatory region 589250	6 bp proximal
Rr589251	regulatory region 589251	243 bp proximal
Tssr36545	transcription start site region 36545	573 bp downstream
Tssr36546	transcription start site region 36546	175 bp upstream
Tssr36547	transcription start site region 36547	265 bp upstream