rs52239398 SNP Detail

Summary

• ID
  rs52239398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82906675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG TCAAGACCAC ACTTAATAAT
  Y
  CTTCTAATCA TTTCAAACAG TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136700067	ENSMUSSNP5813482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323044122	CHEV_9_82918229	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52239398					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82906675 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	606 bp upstream
Rr401561	regulatory region 401561	699 bp downstream
Rr683838	regulatory region 683838	642 bp distal
Rr683839	regulatory region 683839	497 bp distal
Tssr90739	transcription start site region 90739	615 bp upstream