rs52240128 SNP Detail

Summary

• ID
  rs52240128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCATTA TGTAGTCATG
  GCTGGCCTCA ATTTCATAAA AATCTACCTG CCTCTGCCAC CCAAGTGCTG AGACTAAATT
  AATGCATGCG ATACCAAGTC TGGCAAGATA AAAGAAGTAT TTTTTTAAAG TAGTTTAATC
  CGGGGGGGGC GGGGGGAGTG ACACACAGCC CTCAGGAGGC AGAGGCAGGC AGTTTTCTAT
  R
  AGTTCGAGGC CAGTCTGGTC TACATACCAA GTTCCAGGAC AGGCAGAGCA CCACACATTA
  TTTAAAAAAA AAAAAAAAAA AAAAGCGTAA ATCCGTTTCC CAGAGCCTCA GCATTCTCTT
  TGGACAGAAT GTGTCTACAT TCAAGCTTAC TGTTCTGTCT TCTGAGACAG AGTTACTATG
  TAACCTTTGC AGGCCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147738250	ENSMUSSNP4915794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52240128					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	220 bp distal
Cpgi2388	CpG island 2388	805 bp proximal
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	457 bp proximal
Rr402345	regulatory region 402345	263 bp downstream
Rr402346	regulatory region 402346	530 bp upstream
Spryd4	SPRY domain containing 4	480 bp upstream
Tssr99849	transcription start site region 99849	499 bp upstream
Tssr99850	transcription start site region 99850	451 bp upstream