rs52240580 SNP Detail

Summary

• ID
  rs52240580
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151249424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTTTAG AAAACAGCTC
  CAGGGGCTCA GTGGGTGAGG GAACACTTGC AACACAAGCA CGAGAACATC AATTTGAATC
  CCTAGTCCTA TAGTAGTAGT ATACCTCAGT GCCGTGAGAC AGAGGGTAGG GCACCCGCTA
  AAGCATGCTG TCTGCCAGCC TAGCACCAGC CTAGCTTCAG GAGTGTCCAT CTTATGGAAA
  K
  ACAACAGAGA GGGACAGAAC GAGAGAGAGG AGAGAGAGAA GAGAGGAGAG AGAGAAGAGA
  GGAGAGAGAG GGACAGGAGA GAGAGAGAAA GAGAGAGGAG GGAGAGAGAG AGGAGAGAAG
  AGGGAGAGAG GAGGGAGAGA GAAAGAGAGG AGGGAGGGAG AGAGAAGAGA GAGGAGAGAG
  AGGGGGAGGG AAAGGAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60818953	NES16490628	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52240580					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818953	NES16490628	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151249424 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			1679 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant