rs52240594 SNP Detail

Summary

• ID
  rs52240594
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105789094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCATCCA
  TAACAAGATG ATGCCCTCTT CTGGAGTGTC TGAAGATAGC TACAGTGTGC TTACATATAA
  C
  AAATAAATAA ATAAATAAAT AAATAAATAA ATAAATAAAT AAAATCTTTA AAAAAAAAAA
  AAAAAAAAAG ATTAAGCTAA AAACAAGATG TGGAACCTGG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132765605	ENSMUSSNP819416	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52240594					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105789094 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231187	regulatory region 231187	94 bp distal
Rr386628	regulatory region 386628	527 bp upstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates