rs52240739 SNP Detail

Summary

• ID
  rs52240739
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGC GCGTGCGCGC GCACGCGCTC
  T
  GATGCAATCT CCACATTCAT AACCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148124158	ENSMUSSNP29368	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52240739					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075878 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	mRNA-UTR
Cpgi15496	CpG island 15496	55 bp proximal
Rr377473	regulatory region 377473	796 bp upstream
Rr606628	regulatory region 606628	892 bp distal
Rr606629	regulatory region 606629	59 bp distal
Rr606630	regulatory region 606630	1153 bp proximal
Rr606631	regulatory region 606631	1218 bp proximal
Rr606632	regulatory region 606632	1229 bp proximal
Rr606633	regulatory region 606633	1471 bp proximal
Rr606634	regulatory region 606634	1832 bp proximal
Rr606635	regulatory region 606635	1967 bp proximal
Sdf4	stromal cell derived factor 4	1451 bp upstream
Tssr1404	transcription start site region 1404	1518 bp upstream
Tssr40748	transcription start site region 40748	979 bp upstream
Tssr40749	transcription start site region 40749	1722 bp upstream
Tssr40750	transcription start site region 40750	1809 bp upstream
Tssr40751	transcription start site region 40751	1884 bp upstream
Tssr44987	transcription start site region 44987	910 bp downstream
Tssr44988	transcription start site region 44988	1183 bp downstream