rs52241117 SNP Detail

Summary

• ID
  rs52241117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43855923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGAAACC TTAAAACACT ACCATGTGAC CCCAGCTAGG
  CATAAACACT GTGATATATA TATATATATA TATATATATA TATATATATA TATATATATA
  Y
  ACACATTGAT CACTAATTGA GAAAATGCCT TACAGCTGGA TCTCATGGAA TATTTTATAT
  ATATATATAT ATATATATAT ATATATATAT ATATATATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147020792	ENSMUSSNP2546542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52241117					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43855923 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	1747 bp upstream