rs52242423 SNP Detail

Summary

• ID
  rs52242423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152335603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTACAAG GAAGGCTTTA
  GATGTGGCCT GTGTGTCCCC TGGAGCCATG TGGGTGTTGC ACCTGTTTCT GTCAGCCCTG
  CCCTCCCTGT ATGGAAGGAA GTAATCCTGT CTACTTCTTT TTCGTTTTCT ATGATGATGC
  TATTTTCTGT TTTCTTTTTT AATTCCTTGG GGGCTTTGAG ATGCCATTCC TTTGTATTAG
  Y
  TGGCTAAGTC TATAGTAAGA TTTTGATTCC TTTTTCATTT ATTTCAGTGT ATAGTTTTTG
  GTTGTTCTCG TCATGGTTTC TCTGGGTATT GCAACTAACA ACTAAGTTTA TAATTAGTGT
  TCAGGTCGGT AGCTATGTAG TTTTAAGAGT GCATGAAGAC TTTGGTCCTA TATAGCTTTT
  TCTCTCCTTT TTATTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145731263	ENSMUSSNP661452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52242423					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152335603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			524 bp distal
Rr420465	regulatory region 420465			1927 bp proximal