rs52242515 SNP Detail

Summary

• ID
  rs52242515
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTCATAAGC TCTATATTTG TATTTAGGTT CCCTTTCTCT
  CTCTCTCTGT TTCTCTGTCT GTCTCTCTCT TTCTGTCTCT CTGTCTCTGT CTCTGTCTCT
  S
  TCTCTTTCTC TCTCTCTCTC TCTCTCTCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  CTCCTGAGAG GCTCTGCCAG TGCAAATACA AATACAGAGG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss147915703	ENSMUSSNP6266275	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs52242515					SNP	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147928890	ENSMUSSNP1542493	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/G
ss147937415	ENSMUSSNP6175338	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077389 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	within coordinates
Gm17019	predicted gene 17019	1575 bp downstream
Gm71745	predicted gene, 71745	within coordinates