rs52244817 SNP Detail

Summary

• ID
  rs52244817
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TTGTTGGGTT TTTTGTTGTT
  S
  TTTTTCGAGA CAGGATTTCT GTGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137298235	ENSMUSSNP5503543	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss323931440	CHEV_12_21380996	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52244817					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425136 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1503 bp upstream
Cpgi4477	CpG island 4477	928 bp distal
Gm49586	predicted gene, 49586	789 bp downstream
Tssr112932	transcription start site region 112932	1356 bp downstream
Tssr112933	transcription start site region 112933	878 bp downstream
Tssr115856	transcription start site region 115856	1643 bp upstream
Tssr115857	transcription start site region 115857	1617 bp upstream
Tssr115858	transcription start site region 115858	1589 bp upstream
Tssr115859	transcription start site region 115859	1543 bp upstream
Tssr115860	transcription start site region 115860	1518 bp upstream