rs52246650 SNP Detail

Summary

• ID
  rs52246650
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89509130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGACAGAGAG ACCAACCCCC AGAAGGTGAC CTCTGACCTC
  CACACTACCA CAGTATACAC ACACACATAC ATACATACAC ACACATACAC ACACACATAC
  W
  CACACACACA CACACTCACA CATATATACA CACACACACA CACTCTCTCT CTCTCTAAAC
  AAACAAAACA GCTAGGGCTC ATTGGTACAG CACTTGCCTG G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147258207	ENSMUSSNP6111281	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52246650					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89509130 () rs orientation: forward

Symbol	Name	Function Class
Scyl2	SCY1-like 2 (S. cerevisiae)	within coordinates
Tssr98887	transcription start site region 98887	922 bp downstream