rs52247160 SNP Detail

Summary

• ID
  rs52247160
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47886396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG GTCGGCTCTA TAAATTCCTC
  C
  TTTTGCGGAT TTCGGAGGAG AAATC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139408797	ENSMUSSNP5334102	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324597837	CHEV_14_48268614	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52247160					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47886396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	within coordinates
Ktn1	kinectin 1	155 bp upstream
Rr297095	regulatory region 297095	within coordinates
Tssr125321	transcription start site region 125321	512 bp downstream
Tssr125322	transcription start site region 125322	469 bp downstream
Tssr125323	transcription start site region 125323	163 bp upstream
Tssr125324	transcription start site region 125324	354 bp upstream
Tssr125325	transcription start site region 125325	1447 bp upstream
Tssr128337	transcription start site region 128337	275 bp downstream