rs52247639 SNP Detail

Summary

• ID
  rs52247639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCATCTA TTTTATAAGT
  AGTCCCTGTA TAGCTAAATA CCCAACTATG CATACTCTCC CTAAAGATCT GATACAATGC
  ATTATGTGTC AATTTATCTA CTTGTCAGTA TAATGTATTC CTTATCTAAT TCATTCGACT
  TTGTGGAATT CTTACAGGGA AGAGGAATTA CATTTTTCAT GATATTGTTC CCAGTGCTGG
  R
  ACTATGCCAG GAGTTCAGTG ACTCTCCTAC ACAGACACAG ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAA ACACACACAC ACACACACAC ACACACACAG
  TATAGTTGTC TAAAACAACT GGTGTTGTAA CACTCATCAT CTCTCCTTCC AGACAAAGAA
  AAGAGCAAGA TGCCTACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61683902	NES17636588	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52247639					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683902	NES17636588	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939288 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1113 bp proximal
Rr269010	regulatory region 269010	878 bp proximal