rs52248346 SNP Detail

Summary

• ID
  rs52248346
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTAAAGC TGCCACCTTG TGAAAAATGA TGAGTTAGGG
  ACTGAAACCT TTGCCTTCTG GAGATCGAAG GAAAGTAGTA CGGTTAGCCC CTGACCATGA
  G
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACACC ACATACATAA
  CTGTACTCAT AGAGACTTCC TTCTGTATCT GGGCCTTTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss131877116	ENSMUSSNP4504382	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52248346					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535229 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	905 bp upstream
Cpgi2667	CpG island 2667	794 bp distal
Rr233134	regulatory region 233134	629 bp distal
Rr246448	regulatory region 246448	628 bp distal
Rr385862	regulatory region 385862	1454 bp downstream
Tssr107205	transcription start site region 107205	1124 bp upstream
Tssr107206	transcription start site region 107206	1000 bp upstream
Tssr107207	transcription start site region 107207	920 bp upstream