rs52249027 SNP Detail

Summary

• ID
  rs52249027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97794271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC CCAGGCTGGC TCATTACATA
  S
  ATATGGACAG CAGGGTGCAA GCCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	WSB/EiJ
ss60427123	NES15930623	PERLEGEN	MM_PANEL2	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	WSB/EiJ
rs52249027					SNP	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427123	NES15930623	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97794271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	1220 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	1742 bp proximal
Tssr34685	transcription start site region 34685	1673 bp downstream
Tssr34686	transcription start site region 34686	1731 bp downstream
Tssr34687	transcription start site region 34687	1872 bp downstream
Tssr34688	transcription start site region 34688	1956 bp downstream