rs52249162 SNP Detail

Summary

• ID
  rs52249162
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26495868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGCCCC CTCAGGAATG TATGCTGAGT CCTTCCTGCC
  TTTTAATTCT AACCAACCTG GTGTCCTTTT TATTTATTCA TTTAGCGTAT TGGTTTATGT
  C
  TTTAAGGTTT TTTGTTTGGT TTGGTTTGGT TTGTTTTTTT GGGGGGTGGG TTGTTTTTGT
  TTTTTTGAGA CAGGGTTTCT CTGTGTAGCC CTGGCTGTC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146386102	ENSMUSSNP3922857	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52249162					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26495868 () rs orientation: forward

Symbol	Name	Function Class
Agpat2	1-acylglycerol-3-phosphate O-acyltransferase 2	1439 bp upstream
Cpgi11355	CpG island 11355	956 bp distal
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	1249 bp downstream
Rr42175	regulatory region 42175	68 bp distal
Rr42176	regulatory region 42176	1333 bp proximal
Rr56481	regulatory region 56481	867 bp distal
Tssr16811	transcription start site region 16811	1782 bp downstream
Tssr16812	transcription start site region 16812	1350 bp downstream
Tssr23136	transcription start site region 23136	1682 bp upstream
Tssr23137	transcription start site region 23137	1629 bp upstream
Tssr23138	transcription start site region 23138	1604 bp upstream
Tssr23139	transcription start site region 23139	1547 bp upstream
Tssr23140	transcription start site region 23140	1426 bp upstream
Tssr23141	transcription start site region 23141	1231 bp upstream
Tssr23142	transcription start site region 23142	1958 bp downstream