rs52249772 SNP Detail

Summary

• ID
  rs52249772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64646110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCTGTA ACTCCAAGAT
  CTGACACCCT GATGCAGACA TACATGCAAA CAAAACACCA ATGCACATGA AATAAAACTA
  AACTTAGAAT GCCACCTAGC AGTAGTGAAA CTAAGTTCAA TCCCCAGAGC CATTAAATAA
  ATATAATGCA TGTATATGCA TATATACATA TACATAATCT ATTTATAATT TATATTTCTC
  Y
  ATTGGTGAAC AAAAGTTAGA ATACATGTTC ATTGTTAAAA ATAAGAAACA GAACACGGGT
  GATGACCAAC CTAAACATCA CCAGTGTGGT CTTACACAAA TAGGTTCCCT TTTCTTATTT
  CATTTAGAAA CCCACTAAGC AATTGGTGTA ATACTCCATT TAGAGCAAGA ACACCACAGA
  GTTGTCTCTG ATATCCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61173166	NES16687508	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52249772					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173166	NES16687508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64646110 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	within coordinates
Rr118672	regulatory region 118672	491 bp proximal
Rr129656	regulatory region 129656	892 bp proximal
Rr131555	regulatory region 131555	1568 bp distal
Rr367844	regulatory region 367844	769 bp downstream
Tssr46401	transcription start site region 46401	894 bp downstream