rs52252196 SNP Detail

Summary

• ID
  rs52252196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171287086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATTTAAAT CCAGGAAAAG GTACTTCATG
  CTTGCACCAT ATGTGTCTGT CTGCATTTAT CTAAGGACTC TGCCTTAAAG CTATAAATAA
  ACACATTCTT TGTGAATTTG AACTTTGAAG ACAAATGAAA TGAAGGTGTA TGTGCTCATA
  Y
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtTCACAGAG
  TCCTCTGTCA CTAGTACTTT AGGGATTTTT CCTACGAACC CTGATAATTT TCCCACTCCC
  GTATTATTTA ACTCCTGGCT CCTTGTGTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss119999088	PARCsnp_1.13621	PARC_SEQ	INBRED	f	SNP		T	C
ss120001204	PARCsnp_1.02870	PARC_SEQ	INBRED	f	SNP		T	C
ss146163848	ENSMUSSNP4332591	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320119044	CHEV_1_173389649	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs52252196					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171287086 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	1570 bp distal
Rr31965	regulatory region 31965	116 bp proximal
Tssr10057	transcription start site region 10057	1399 bp downstream
Tssr10058	transcription start site region 10058	1159 bp downstream