rs52252297 SNP Detail

Summary

• ID
  rs52252297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23116987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT AGTGTCTCAT AGAGAAAAAG
  W
  GCCTTTCATA CTCAGGATAA ATGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146216125	ENSMUSSNP1632106	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss325768025	CHEV_19_23214113	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52252297					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23116987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	1031 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	520 bp upstream
Klf9	Kruppel-like transcription factor 9	1603 bp upstream
Rr405898	regulatory region 405898	977 bp upstream
Rr545290	regulatory region 545290	52 bp proximal
Rr545291	regulatory region 545291	531 bp proximal
Rr545292	regulatory region 545292	1481 bp proximal
Tssr155578	transcription start site region 155578	484 bp upstream
Tssr155579	transcription start site region 155579	1199 bp upstream
Tssr155580	transcription start site region 155580	1317 bp upstream
Tssr155581	transcription start site region 155581	1333 bp upstream
Tssr155582	transcription start site region 155582	1356 bp upstream
Tssr155583	transcription start site region 155583	1396 bp upstream
Tssr155584	transcription start site region 155584	1441 bp upstream
Tssr155585	transcription start site region 155585	1503 bp upstream
Tssr155586	transcription start site region 155586	1560 bp upstream
Tssr158621	transcription start site region 158621	1014 bp downstream
Tssr158622	transcription start site region 158622	1344 bp downstream