rs52252508 SNP Detail

Summary

• ID
  rs52252508
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156881019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCGAGTTCAG CTTCTAGCAC CCTAATCAAG GAGCTCACAA
  CCACCTTCAA CTCTAGCTCT GGGGGCTCCA GCACTTTGCT CTGCCTTCTG TGGGTACACA
  S
  ACACACACAC ACACACACAC ACACACACAC ACCTGCACAC ACATATGCAA ACTTTCTTTT
  TTTTTTTTTT TTTCTTTTTC TTTTTTTTCC CGTTTTTTAA G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148090110	ENSMUSSNP305804	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52252508					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156881019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12565	CpG island 12565			817 bp proximal
Mtcl2	microtubule crosslinking factor 2			Intron
				Noncoding-Transcript-Variant
Rr568412	regulatory region 568412			1488 bp proximal