rs52252703 SNP Detail

Summary

• ID
  rs52252703
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26387527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAAATCCTAG GCGGAGCGGT AGCTCCAGAT GGGTCCCCTG
  CTCGCGTCCC CGCCGCTGCC GCTGCTACCT GTAGACAGGC ACACACACAC ACACACACAC
  A
  CACACTCACG CGCGCACACA CACATCAGCC TCTGCTGCGC GCGCTCTCTC CCTCTCTTGG
  CCATACGCTG GGAGCTGGAG TCTCAACACA ACTAGATCTA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss134694016	ENSMUSSNP1394008	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52252703					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26387527 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	1244 bp distal
Cpgi13016	CpG island 13016	within coordinates
Nlgn1	neuroligin 1	918 bp upstream
Rr77454	regulatory region 77454	within coordinates
Tssr32830	transcription start site region 32830	1864 bp upstream
Tssr32831	transcription start site region 32831	1558 bp upstream
Tssr32832	transcription start site region 32832	1529 bp upstream
Tssr32833	transcription start site region 32833	1477 bp upstream
Tssr32834	transcription start site region 32834	1461 bp upstream
Tssr32835	transcription start site region 32835	1435 bp upstream