rs52253521 SNP Detail

Summary

• ID
  rs52253521
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTCTGG GTTTAGTATT ACTTTAATTT TAGCATTTTC
  ATCCTCTATA ATCTCTGCTC TTCCAAATTT TCTTTCCTTT TGGTTTTTTA TTTCCTTCTG
  M
  AGATTTTCTG TATTTTCTGA CTTTCTACTT AATTTTATCT ACCATCCTGT GCATCCCACA
  CACTTTATTG TCCATTTTTC CTCATGCAAA TTTCAAGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss62443721	NES17255320	PERLEGEN	MM_PANEL2	f	SNP	C	A		C	C	A
ss139660897	ENSMUSSNP7032778	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52253521					SNP	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443721	NES17255320	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830005 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	860 bp proximal
Tssr126359	transcription start site region 126359	1738 bp upstream