rs52253680 SNP Detail

Summary

• ID
  rs52253680
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178250584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTGGGGA GAAGAGAGTC CCTGGGGCTC CCTCTCCAGC
  CAGGGTGAGG AGCCACTTGT CTCTAAAGGA GGCTATCTGA TGGTGACACC TGAGGTTGAG
  T
  TTTTTCCTCA CATGTGCACC AAACAACACC CACAACACGC ATGTCTCACC CACACCCACA
  CCCACACATG CATACAGAAA ACAAATAAGT GGAGGTTTG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148365990	ENSMUSSNP4231204	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52253680					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178250584 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	1990 bp upstream
Rr572434	regulatory region 572434	1294 bp distal
Rr572435	regulatory region 572435	1605 bp proximal