rs52253774 SNP Detail

Summary

• ID
  rs52253774
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112500298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATAATAATAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  M
  GCGCGGGCAT GGTTGGGGGG AAGGAGATAA AGGTTAGAAA ATAGCTTTCA GTGTGAGTTC
  CAAAGCTGAA ACTTATGTCA TCAGACTTGA TGACAGACAT T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145237613	ENSMUSSNP1470988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52253774					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112500298 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
D13Mit260	DNA segment, Chr 13, Massachusetts Institute of Technology 260	1832 bp proximal
Gm48837	predicted gene, 48837	within coordinates
Rr278286	regulatory region 278286	1802 bp distal
Rr282338	regulatory region 282338	98 bp distal
Rr282339	regulatory region 282339	1704 bp proximal
Tssr121108	transcription start site region 121108	328 bp downstream
Tssr121109	transcription start site region 121109	296 bp downstream