rs52253945 SNP Detail

Summary

• ID
  rs52253945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123268139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGGTACATG TGTATAGTCC CAGCATTCTA GAGGCAAGAA
  CTGGAAAATC AAGAGATCAA GGCCAGCCTG GGCTATACAA GACCCCATGT CAAAGAGAGG
  R
  GTGGGGGAGG GGGAGAGAGA AGAAGAGGAA GGATGGAGAG GAATAGAATT AAAAGTGAGT
  AGGTAACCAG GTGTGATAAT GTCTTTACTC CCCTCACCCA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137077261	ENSMUSSNP4601208	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52253945					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123268139 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	1462 bp proximal
Rr203065	regulatory region 203065	1753 bp proximal
Rr208064	regulatory region 208064	663 bp proximal