rs52255938 SNP Detail

Summary

• ID
  rs52255938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79629885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTGAGT TTTTTTTTTG TTCATTTGTT TGGGTTGTTT
  GTTTGTTTGT TTGTTTGTTT GTTTTTAAAG AAGAAAAAGA AGCCAGCAGT GCTGAAGAGT
  R
  GACTCAGTCA AATATTCTAG CTCTTCCAGA GTTCCCAGCA CTTGACAACC CCCTCTATAC
  CCAGAGGACC TAATGATTAC TCCTAGCCTC TGTGCATTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324677541	CHEV_14_79792252	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52255938					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79629885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	1485 bp distal
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	1657 bp upstream
Rr404230	regulatory region 404230	1499 bp downstream
Rr404231	regulatory region 404231	983 bp upstream
Rr404232	regulatory region 404232	1700 bp upstream
Rr496090	regulatory region 496090	1678 bp distal
Rr496091	regulatory region 496091	1721 bp distal
Rr496092	regulatory region 496092	1177 bp distal
Rr496093	regulatory region 496093	1633 bp distal
Rr496094	regulatory region 496094	886 bp proximal
Tssr129901	transcription start site region 129901	1792 bp upstream
Tssr129902	transcription start site region 129902	1702 bp upstream