rs52256840 SNP Detail

Summary

• ID
  rs52256840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14916152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATGGCAG AGATTCCAGG
  GTAGAGCAGA GGGCATAGGG TACAGGATGG GCATACTCTG CAGCCTGTAG GGCTCCCTGC
  TGCTAGTAAA GTGTAGAAAG ACTTCACCTC TGAAATATCA CACACACACA CACACACACA
  CACACACACA GACACACAGA CAAATCAAGA GAGTTTGATG GAAGAGCTGA CAGTACATGA
  Y
  ATGCAATGAG TCTTGGGAAG TCCAGGAACA CACCAGGCAG GGACATACGC ATAGTAGGGT
  CAGTGTTGAA ATGGGCTCCT AAGGTAGTGG CTGCTGAGAG CTATGGGTAA GTCCAGCCAT
  GACCACAGGA CTATCCCAGG AGGGAAATCA TGGAGCTGGT GTCATTGACC CTCATGTCCA
  TTCTATAGCA TAAAGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540254	NES16561368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52256840					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540254	NES16561368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14916152 () rs orientation: forward

Symbol	Name	Function Class
Rr522558	regulatory region 522558	1666 bp distal
Rr522559	regulatory region 522559	1352 bp distal
Rr522560	regulatory region 522560	779 bp proximal
Thbs2	thrombospondin 2	1655 bp upstream
Tssr146500	transcription start site region 146500	1791 bp upstream
Tssr146501	transcription start site region 146501	1648 bp upstream