rs52257088 SNP Detail

Summary

• ID
  rs52257088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61209330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGTAAAAGGG CTTGCTATGG AAGCCCTGTG GCCTGCAAAT
  CCTGCAAATC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCAC
  W
  CACACACACA CACACACACA CATAATAAAT ATTAAAAGAT AACCAAGTGA AGAGTCACAA
  GGGCATCCAG TGTCTCACAC ATGTGCATAT ATCACACATA C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136538558	ENSMUSSNP7003551	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52257088					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61209330 () rs orientation: forward

Symbol	Name	Function Class
Rr204421	regulatory region 204421	1236 bp distal
Rr204422	regulatory region 204422	769 bp proximal
Rr209972	regulatory region 209972	1530 bp distal