rs52257917 SNP Detail

Summary

• ID
  rs52257917
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76021752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAAAAAC AACAAAGGAA GGAAGGAAGG AAAGAAAGAA
  GGACGGAAGG GAGGGAGGGA GTCTGAACTC CAGAAAAAGT GATAGCAGAA AAAAAGTTAC
  C
  TCTGGTGGCA GTAAAAACAG GCACTAAACA GTCACTCTGT ACAACATAAC CAAACACTTA
  GCTAAATTAA ACCAACTGTG AGCAAAAGAA ATCCACCAA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144640640	ENSMUSSNP1960594	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324437435	CHEV_13_76011081	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52257917					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76021752 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	1849 bp proximal
Rr277199	regulatory region 277199	1448 bp proximal
Rr277200	regulatory region 277200	1849 bp proximal