rs52258143 SNP Detail

Summary

• ID
  rs52258143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTTTGCGCGC
  R
  CATACGCATA GGAGTACAGA CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136336795	ENSMUSSNP5255819	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322918981	CHEV_9_40540187	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52258143					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643400 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	999 bp distal
D9Mit253	DNA segment, Chr 9, Massachusetts Institute of Technology 253	1974 bp proximal
Gm68229	predicted gene, 68229	502 bp upstream
Gm68234	predicted gene, 68234	435 bp downstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	1147 bp distal
Rr676904	regulatory region 676904	513 bp distal
Rr676905	regulatory region 676905	134 bp distal
Rr676906	regulatory region 676906	249 bp proximal
Tssr84462	transcription start site region 84462	1126 bp downstream
Tssr84463	transcription start site region 84463	1090 bp downstream