rs52260038 SNP Detail

Summary

• ID
  rs52260038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24926876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTCCTTT CCTTTCCTTT TTCCTTTCCT TTCCTTAACT
  GTCCTGTCCT TTTTTTTTTT TTCTTTTGGT TTTGTTAGAC AAGATGTCTT TTACAACAAC
  R
  GATTGGTGTC TCGGCGGTGC TTAAAGCTTC CCCTATCGCC GGGCGTGGTG GCGCACGCCT
  TTAATCTCAG CACTGGGGAG ATCGAGGCCA GCCTGGTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552604	NES16570714	PERLEGEN	MM_PANEL2	f	SNP			G	G	A	G	G		G	G	G	A	G	G	G
ss145361756	ENSMUSSNP800708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52260038					SNP	A	A	G	G	A	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552604	NES16570714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24926876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	within coordinates
Rr405091	regulatory region 405091	50 bp downstream
Rr523395	regulatory region 523395	253 bp distal
Rr523396	regulatory region 523396	within coordinates
Rr523397	regulatory region 523397	758 bp proximal
Rr523398	regulatory region 523398	960 bp proximal
Tbl3	transducin (beta)-like 3	249 bp upstream
Tssr146772	transcription start site region 146772	292 bp upstream
Tssr146773	transcription start site region 146773	241 bp upstream