rs52260925 SNP Detail

Summary

• ID
  rs52260925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GTGGGAGTGG GTGTGCGTGT
  R
  CATGGACACA CACGTGTTCA ATGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009825	PARCsnp_1.18991	PARC_SEQ	INBRED	f	SNP		A	G
ss120013110	PARCsnp_1.08822	PARC_SEQ	INBRED	f	SNP		A	G
ss146189479	ENSMUSSNP6154366	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320124574	CHEV_1_174298453	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs52260925					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	607 bp proximal
Cpgi1046	CpG island 1046	1462 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	646 bp proximal