rs52261072 SNP Detail

Summary

• ID
  rs52261072
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27934140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGGCAAGGGA CTTAACAAAC
  M
  TCTCTCTCTC TCTCTCTCTC TCTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145418895	ENSMUSSNP6240748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325349169	CHEV_17_27852111	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52261072					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27934140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1847 bp proximal
Rr524284	regulatory region 524284	1953 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates