rs52261542 SNP Detail

Summary

• ID
  rs52261542
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54386972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TGAGAGGGGG GCTGGGGAAG
  A
  GGGATGGGGG AAGGAAACTG TGGGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139556796	ENSMUSSNP1159595	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324635109	CHEV_14_54769190	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52261542					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54386972 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	647 bp downstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdv5	T cell receptor delta variable 5	314 bp upstream
Tssr128536	transcription start site region 128536	275 bp upstream
Tssr128537	transcription start site region 128537	256 bp upstream
Tssr128538	transcription start site region 128538	235 bp upstream
Tssr128539	transcription start site region 128539	172 bp upstream
Tssr128540	transcription start site region 128540	1884 bp downstream