rs52261724 SNP Detail

Summary

• ID
  rs52261724
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32417839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT ATGCCTCGAA AAAAAAAAAA
  C
  AAAAACAAAA ACAACAACAA CAACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134748735	ENSMUSSNP146879	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52261724					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32417839 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1799 bp upstream
Cpgi13055	CpG island 13055	1254 bp proximal
Rr374783	regulatory region 374783	within coordinates
Rr574945	regulatory region 574945	543 bp proximal
Rr574946	regulatory region 574946	961 bp proximal
Rr574947	regulatory region 574947	1778 bp proximal
Rr574948	regulatory region 574948	1978 bp proximal
Rr574949	regulatory region 574949	1979 bp proximal
Tssr28742	transcription start site region 28742	702 bp upstream
Tssr28743	transcription start site region 28743	1221 bp upstream
Tssr28744	transcription start site region 28744	1616 bp upstream
Tssr28745	transcription start site region 28745	1646 bp upstream
Tssr32923	transcription start site region 32923	1454 bp downstream
Tssr32924	transcription start site region 32924	1493 bp downstream
Tssr32925	transcription start site region 32925	1733 bp downstream
Tssr32926	transcription start site region 32926	1918 bp downstream
Tssr32927	transcription start site region 32927	1953 bp downstream
Zmat3	zinc finger matrin type 3	Intron