rs52262089 SNP Detail

Summary

• ID
  rs52262089
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32245299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA GCATACAACA TAGATCACAG
  M
  AGAACAGTTT TCCACACATA AGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss131933833	ENSMUSSNP4116196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323630337	CHEV_11_32195299	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52262089					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32245299 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	1189 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	1190 bp upstream
Rr444566	regulatory region 444566	1928 bp distal
Rr444567	regulatory region 444567	1473 bp distal
Rr444568	regulatory region 444568	1172 bp distal
Rr444569	regulatory region 444569	700 bp proximal
Rr444570	regulatory region 444570	1997 bp proximal
Tssr100842	transcription start site region 100842	1192 bp upstream
Tssr100843	transcription start site region 100843	1828 bp upstream