rs52262359 SNP Detail

Summary

• ID
  rs52262359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGTAA GAGCACCCGA
  CTGCTCTTCT GAAGGTCCAG AGTTCAAATC CCAGCAACCA CATGGTGGCT CACAACCATC
  CGTAACAAGA TCTGACTCCC TCTTCTGGTG TCTGAAGACA GCTACAGTGT ACTTACATAT
  AATAATAAAT AAATCTTAAA AAAAAAAAAA AAAGAATTTT CCTTATCAAG TAGCAAAAAA
  W
  TTTTTTGAGA GTTTTTTTTT TTTTGTTTTT TGTTTTTTTT TTAGCCTGGT TTAAACAGTG
  AGTTCCAAGA CAGCTGGGGC TACAAAGAGA GACTCTGTTT CAAAAAAATT TTTTTTCAAA
  ATTTAATTTC ATGTGTCGTG CCTGAATATG TGCATCATGT GCATACCTTG TGTCTGCAGA
  CCCCAGAGAG GGTGCTGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145701279	ENSMUSSNP6633141	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52262359					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	929 bp proximal
Cpgi9243	CpG island 9243	1974 bp proximal
Gm65860	predicted gene, 65860	1273 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Rr331605	regulatory region 331605	1900 bp distal
Rr331606	regulatory region 331606	100 bp distal
Rr331607	regulatory region 331607	301 bp proximal
Rr339923	regulatory region 339923	500 bp proximal
Tssr148377	transcription start site region 148377	1451 bp upstream
Tssr148378	transcription start site region 148378	1432 bp upstream
Tssr148379	transcription start site region 148379	1419 bp upstream
Tssr148380	transcription start site region 148380	1056 bp upstream
Tssr148381	transcription start site region 148381	402 bp upstream
Tssr148382	transcription start site region 148382	1384 bp downstream