rs52262485 SNP Detail

Summary

• ID
  rs52262485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:28721163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGCAT CTGTATTTTG
  TGTCTGTGTG TTGCGTCTGT GTTGTGTCTC TGTGTGTGTC TGTGTGTTGT GTCTGTGTTG
  GGAACAAAAT TCCCCACATG TCTGTGTGTG TCTGTGAGTG TGTGACTGTG TGTTGTCTCT
  GTGTGTATCT GTGTGTGTGT TGTGTATTGT GTGTTGTGTA CACACTTCTC TTACCTTGGC
  Y
  CTGCCTTCCT CACACATCTA CGGTGGCACC CTCCACATGG GAGGAAACCA GTAATCATCT
  GCTGAGTCTT TGAATGAGAG GACAAATCCA TGAATCACTC CGATAGGGAA GGGCTGAATA
  CTGTTCCCAT TCCTGAGAAG TGAAACCTGA TTCAAAAAGA TTTAGTGCTG CGTAACAGGC
  AGGAAGCAGT TCTTCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60201962	NES15703410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52262485					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60201962	NES15703410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:28721163 () rs orientation: forward

Symbol	Name	Function Class
Mb21d2	Mab-21 domain containing 2	within coordinates
Tssr140667	transcription start site region 140667	182 bp downstream