rs52262657 SNP Detail

Summary

• ID
  rs52262657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152612299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCTATCC ACTGCAGATT
  CTTTTTTTCT TTTTTTTCAA AACATTTTTA AAAATGTTTT TAAATTTATT TTATGTATGA
  GTACTCTATC TGTATGTCAC TTGCATGCCA GAAGATCCCA TTACAGATGG TTGTGAGCTC
  CATGTGGTTG CTGGGAGTTG AACTCAGGAC TTTTGGAAGA GCAGCCAGTG CTCTTAACCA
  Y
  GGAGTCATCT CTCTAGCCTG CTTGTTTTTT TTTTGTTTGT TTGTTTGTGT TTTTCGAGAC
  AGGGTTTTTC TGAGTAGACC TGGCTGTCCT AGAACTCTCT CTGTACTCCA GGCTGGCCTC
  AAACTCAGAA ATCCACCTGC CTCTGCCTCC CAAGTGCTGG GATTAAATTG TTTTTTTGGT
  TGTTTTTTTA AATTTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147974214	ENSMUSSNP6033330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52262657					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152612299 () rs orientation: forward

Symbol	Name	Function Class
Rr374091	regulatory region 374091	1359 bp upstream
Rr567463	regulatory region 567463	164 bp distal