rs52262789 SNP Detail

Summary

• ID
  rs52262789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135288323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC TCACACACCC ACGTAGCCAC
  R
  CACCGACACA CTTGTGCACC CCAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133802922	ENSMUSSNP4147848	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321986339	CHEV_6_135261343	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52262789					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135288323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	900 bp distal
Gm36582	predicted gene, 36582	830 bp downstream
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	131 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	941 bp upstream
Tssr63760	transcription start site region 63760	955 bp upstream
Tssr63761	transcription start site region 63761	940 bp upstream