rs52263380 SNP Detail

Summary

• ID
  rs52263380
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTTACAT TAATGCTAAT GGCAGTAATA GCTACCCGTT
  TTATTGGTTA CTTTTTCTTC TTTCTTTTTT CTTTCTTTCT TCCTTCCTTC CTTTCTTTCT
  T
  TTTTTTTTTT TTTGAGCTTT CACTTTGCTT GCCTAGAACT CATATCTGTC TGTTTCTGCT
  TCTAGAGTGT TGGGATTAAC GATATGTGAC ACCACAACC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147525992	ENSMUSSNP3926838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52263380					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	619 bp distal
Rr601645	regulatory region 601645	688 bp distal
Rr601646	regulatory region 601646	400 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	Intron
Tssr39548	transcription start site region 39548	1253 bp downstream
Tssr39549	transcription start site region 39549	1196 bp downstream
Tssr39550	transcription start site region 39550	901 bp downstream
Tssr39551	transcription start site region 39551	872 bp downstream
Tssr39552	transcription start site region 39552	799 bp downstream
Tssr39553	transcription start site region 39553	727 bp downstream
Tssr39554	transcription start site region 39554	703 bp downstream
Tssr39555	transcription start site region 39555	498 bp downstream
Tssr39556	transcription start site region 39556	383 bp downstream