rs52263767 SNP Detail

Summary

• ID
  rs52263767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTTATTT ATCTATGTAT TTATTTATTT ATTAATTCCA
  TTGCCCAGAT GTTGTTATGT TTATTTTGAT ATTTAAAGAT ATGCATTCGC TAATTCACTG
  Y
  AATATCTTAA AAGGTCATTT TAATATGTTA AAGTTTATTT TAATAATGTT TAATGTGTTC
  AATTAAAGTT ATTTAACTTA TATAGTTGGA AGGTGATAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198249	NES16702743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52263767					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198249	NES16702743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053285 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47224	transcription start site region 47224	1717 bp downstream
Tssr47225	transcription start site region 47225	1615 bp downstream
Tssr47226	transcription start site region 47226	1546 bp downstream
Tssr47227	transcription start site region 47227	1352 bp downstream
Tssr47228	transcription start site region 47228	1289 bp downstream
Tssr47229	transcription start site region 47229	1268 bp downstream
Tssr47230	transcription start site region 47230	1243 bp downstream
Tssr47231	transcription start site region 47231	1213 bp downstream
Tssr47232	transcription start site region 47232	1066 bp downstream
Tssr47233	transcription start site region 47233	1016 bp downstream
Tssr47234	transcription start site region 47234	981 bp downstream
Tssr47235	transcription start site region 47235	223 bp downstream
Tssr47236	transcription start site region 47236	184 bp downstream
Tssr47237	transcription start site region 47237	164 bp downstream
Tssr47238	transcription start site region 47238	105 bp downstream
Tssr47239	transcription start site region 47239	100 bp downstream
Tssr47240	transcription start site region 47240	81 bp downstream
Tssr47241	transcription start site region 47241	52 bp downstream
Tssr47242	transcription start site region 47242	27 bp downstream
Tssr47243	transcription start site region 47243	9 bp downstream
Tssr47244	transcription start site region 47244	18 bp upstream
Tssr47245	transcription start site region 47245	38 bp upstream
Tssr47246	transcription start site region 47246	89 bp upstream
Tssr47247	transcription start site region 47247	133 bp upstream
Tssr47248	transcription start site region 47248	196 bp upstream
Tssr47249	transcription start site region 47249	266 bp upstream
Tssr47250	transcription start site region 47250	404 bp upstream
Tssr47251	transcription start site region 47251	468 bp upstream
Tssr47252	transcription start site region 47252	520 bp upstream
Tssr51812	transcription start site region 51812	1199 bp upstream
Tssr51813	transcription start site region 51813	1182 bp upstream
Tssr51814	transcription start site region 51814	208 bp upstream
Tssr51815	transcription start site region 51815	162 bp upstream
Tssr51816	transcription start site region 51816	129 bp upstream