rs52265016 SNP Detail

Summary

• ID
  rs52265016
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGTGAGAGCC CATGTGTGAT TGTGTGTGAG TAACTATACA
  CACACACACA TACACACACT TAGATGTTGT GTTTAGTGTG TGTGTGTGTG TGTGTGTGTG
  T
  GAGAGAGAGA GAGAGAGAGA GAGAAGGAGG AGGAGGAGGA GGAAGTTATG TGTTGTGAGA
  AAGTGTGTGT AAGAAACATT GTAACAGACT GTAACCAAGT G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135874475	ENSMUSSNP3414143	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52265016					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	375 bp distal
Fam241a	family with sequence similarity 241, member A	575 bp upstream
Rr398009	regulatory region 398009	325 bp downstream
Rr584896	regulatory region 584896	879 bp distal
Rr584897	regulatory region 584897	84 bp distal
Tssr35607	transcription start site region 35607	1385 bp upstream
Tssr35608	transcription start site region 35608	665 bp upstream
Tssr35609	transcription start site region 35609	628 bp upstream
Tssr35610	transcription start site region 35610	561 bp upstream