rs52265438 SNP Detail

Summary

• ID
  rs52265438
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107342990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATAAA TAAATAAATA
  AATAAATCTT TTAAGAAAAA AGGACAGGGT CCTGCTGGGA GGAGGTTAAC TCACAACACT
  TCTTTTGAAA TGTGAAGGCA TTAAACCAAA CTGCTGCTGT TGGTGGAGGT TTCTCCATGG
  CACCCTCCTA TCCATATGTG TTTAAATGCA ATGGTTTTTA ACTCTTTTTT TGTTTGTTTG
  T
  TTTTGGTTTT TTGTTGTTGT GTTTTTGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC
  TGGAACTCAC TCTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCACCTG CCTCTGCCTC
  CTGAGTGCTG GGATTAAAAG TGTGCGCCAC CACGCCCTGC CCGGTTTTTA AGTCTTTATC
  TGTGTGCATG GAGAGGTCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135584005	ENSMUSSNP735223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52265438					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107342990 () rs orientation: forward

Symbol	Name	Function Class
Rr582971	regulatory region 582971	1580 bp distal
Rr582972	regulatory region 582972	1549 bp distal
Rr582973	regulatory region 582973	791 bp proximal