rs52266987 SNP Detail

Summary

• ID
  rs52266987
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTTCCCCT ATCGCCGGGC GTGGTGGCGC ACGCCTTTAA
  TCTCAGCACT GGGGAGATCG AGGCCAGCCT GGTCTACAAA GTGAGCTCCA GGACAGCCAG
  A
  GCTATACAGA GAAACCCTGT CTCGAAAAAC AAAAACAAAA CAAAACAAAA CAAAACAAAA
  AAAGCTTCCC CTATCACATG CTTCTGTAGA TCTTGTCCA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145361777	ENSMUSSNP784364	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52266987					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	121 bp distal
Rr405091	regulatory region 405091	175 bp downstream
Rr523395	regulatory region 523395	378 bp distal
Rr523396	regulatory region 523396	within coordinates
Rr523397	regulatory region 523397	633 bp proximal
Rr523398	regulatory region 523398	835 bp proximal
Tbl3	transducin (beta)-like 3	374 bp upstream
Tssr146772	transcription start site region 146772	417 bp upstream
Tssr146773	transcription start site region 146773	366 bp upstream