rs52267662 SNP Detail

Summary

• ID
  rs52267662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTAGCCAA AGGAGGAAGG AAAGAAAGAA AGAAAGAAAG
  AAAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAAAGAA AGAAAGAAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAGAAAGACG GAGCTTGACG GTGGGGGTCC CCCAAAGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145462290	ENSMUSSNP341943	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52267662					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	245 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1836 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	544 bp upstream
Rr396264	regulatory region 396264	1613 bp upstream
Tssr196	transcription start site region 196	1697 bp downstream
Tssr8536	transcription start site region 8536	415 bp upstream
Tssr8537	transcription start site region 8537	738 bp upstream
Tssr8538	transcription start site region 8538	766 bp upstream
Tssr8539	transcription start site region 8539	780 bp upstream
Tssr8540	transcription start site region 8540	1906 bp upstream
Tssr13462	transcription start site region 13462	1907 bp upstream
Tssr13463	transcription start site region 13463	1807 bp upstream
Tssr13464	transcription start site region 13464	1765 bp upstream
Tssr13465	transcription start site region 13465	1752 bp upstream
Tssr13466	transcription start site region 13466	1681 bp upstream
Tssr13467	transcription start site region 13467	1639 bp upstream
Tssr13468	transcription start site region 13468	1553 bp upstream
Tssr13469	transcription start site region 13469	1499 bp upstream
Tssr13470	transcription start site region 13470	1409 bp upstream
Tssr13471	transcription start site region 13471	1337 bp upstream
Tssr13472	transcription start site region 13472	1269 bp upstream
Tssr13473	transcription start site region 13473	1254 bp upstream
Tssr13474	transcription start site region 13474	1193 bp upstream
Tssr13475	transcription start site region 13475	1172 bp upstream
Tssr13476	transcription start site region 13476	1160 bp upstream
Tssr13477	transcription start site region 13477	1094 bp upstream
Tssr13478	transcription start site region 13478	277 bp downstream
Tssr13479	transcription start site region 13479	306 bp downstream
Tssr13480	transcription start site region 13480	628 bp downstream
Tssr13481	transcription start site region 13481	1745 bp downstream