rs52268490 SNP Detail

Summary

• ID
  rs52268490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75104685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAGATTTCT GAGTTCAAGG CCAGCCTGGT CTACAAAGTA
  AGTTGCAGGA CAGCCCGGTC TACACAAAGA AACCCTGTCT CGAAAAACCA AAAAAAAAAA
  R
  AGAAAAAAGG AAGGAAGGAA GGAAGGAAGG AAGTTAGCTG CATGTGAACC AGCCGGCAAG
  CAGTGTCCTC CATGGTTCCT GCTGTACTTC TTTGGCTGTG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144691845	ENSMUSSNP2662262	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52268490					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75104685 () rs orientation: forward

Symbol	Name	Function Class
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	within coordinates
Tssr7483	transcription start site region 7483	509 bp upstream
Tssr12338	transcription start site region 12338	536 bp downstream
Tssr12339	transcription start site region 12339	560 bp downstream
Tssr12340	transcription start site region 12340	602 bp downstream