rs52268756 SNP Detail

Summary

• ID
  rs52268756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAAGGGCACA GATGGCAGAA AGGTACAACA AGTAAGGAGC
  AAGTGGGGCT GGTACTCGGC TGCCACGGCC ACTCGTCATC TAGTCGTCGT CATCATCATC
  R
  TCATCGTCAT CGTCGTCATC GTCGTCGTCA TCCTCTGTGT TGATCTCGCC CTCCAGCACG
  TCCTCCAGCC AGTCCTCCAG CTCATCAGCA GAAGGCAGGT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss120007446	PARCsnp_1.17801	PARC_SEQ	INBRED	f	SNP			G	A
ss120010355	PARCsnp_1.07445	PARC_SEQ	INBRED	f	SNP			G	A
ss146184004	ENSMUSSNP7008325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs52268756					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037933 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	21 bp downstream
Tssr15168	transcription start site region 15168	240 bp upstream
Tssr15169	transcription start site region 15169	162 bp upstream
Tssr15170	transcription start site region 15170	140 bp upstream
Tssr15171	transcription start site region 15171	122 bp upstream
Tssr15172	transcription start site region 15172	41 bp upstream
Tssr15173	transcription start site region 15173	42 bp downstream
Tssr15174	transcription start site region 15174	94 bp downstream
Tssr15175	transcription start site region 15175	1617 bp downstream